PUBLICATIONS BY HHMI UNDERGRADUATE RESEARCH FELLOWS
(names of Fellows in bold type; updated September 2015)
1. Ackerman, A.D. and Haag, E.S. 2005. Intraspecific variation in fem-3 and tra-2, two rapidly coevolving nematode sex-determining genes. GENE 349: 35-42.
2. Ahmadzadeh, M., Horng, A., and Colombini, M.. 1996. The control of mitochondrial respiration in yeast: A possible role of the outer mitochondrial membrane. Cell Biology and Function 14: 201-208.
3. Ahn, J., Kreeger, L. J., Lubejko, S. T., Butts, D. A., and MacLeod, K. M. 2013. Heterogeneity of intrinsic biophysical properties among cochlear nucleus neurons improves the population coding of temporal information. J Neurophysiol 111:2320-2331. doi: 10. 1152/ jn. 00836. 2013
4. Alessi, M.L., Norman, A.I., Ho, D.L., Knowlton, S.E., and Greer, S.C. 2005. Helical and coil conformations of poly(ethylene glycol) in isobutyric acid. Macromolecules 38: 9333-9340.
5. Alessi, M.L., Bittner, K.C., and Greer, S.C. 2004. Eight-arm Star Polystyrene in Methylcyclohexane: Cloud point curves, critical line, coexisting densities and viscosities. J. Poly. Sci. B - Poly. Phys. 42: 129-145.
6. Alyokhin, A., Dively, G.P., Patterson, M., Castaldo, C., Rogers, D., Mahoney, M., and Wollam, J. 2007. Cross-resistance to imidacloprid and thiamethoxam in the Colorado potato beetle. Pest Management Science 63: 32-41.
7. Andorko, J.I., Tostanoski, L.H., Solano, E., Mukhamedova, M., Jewell, C.M. 2013. Intra-lymph Node Injection of Biodegradable Polymer Particles. J. Vis. Exp. (71), e50984, DOI:10.3791/50984.
8. Anishkin, A., Gendel, V., Sharifi, N.A., Chiang, C.S., Shirinian, L., Guy, H.R., and Sukharev, S. 2003. On the conformation of the COOH-terminal domain of the large mechanosensitive channel MscL. J. General Physiology 121: 227-244.
9. Anriany, Y., Sahu, S.N., Wessels, K.R., McCann, L.M., and Joseph, S.W. 2006. Alteration of the rugose phenotype in waaG and ddhC mutants ofSalmonella enterica serovar Typhimurium DT104 is associated with inverse production of curli and cellulose. Applied and Environmental Microbiology 72: 5002-5012
10. Arking, D., Tong, Y., and Stein, D. C. 2001. Analysis of lipooligosaccharide biosynthesis in the Neisseriaceae. J. Bacteriol. 183: 934-941.
11. Armani M., Chaudhary, S., Probst, R., and Shapiro, B. 2006. Using Feedback Control of Micro-Flows to Independently Steer Individual Particles. Journal of Microelectromechanical Systems 15: 945-956.
12. Armani, M., Chaudhary, S., Probst, R., Walker, S., and Shapiro, B. 2005. Control of micro-fluidic systems: Two examples, results, and challenges. International Journal of Robust and Nonlinear Control 15: 785-803.
13. Ansar, M., Serrano, D., Papademetriou, I., Bhowmick, T.K., and Muro, S. 2013. Biological functionalization of drug delivery carriers to bypass size restrictions of receptor-mediated endocytosis independently from receptor targeting. ACS Nano 7(12): 10597-10611.
14. Bales, P.M., Renke, E.M., May, S.L., Shen, Y., and Nelson, D.C. 2013. Purification and Characterization of Biofil-Associated EPS Exopolysaccharides from ESKAPE Organisms and Other Pathogens. PLOS ONE 8(6). DOI: 10.1371/journal.pone.0067950
15. Banghart, L.R., Chamberlain, C.W., Velarde, J., Korobko, I.V., Ogg, S.L., Jack, L.J.W., Vakharia, V.N., and Mather, I.H. 1998. Butyrophilin is expressed in mammary epithelial cells from a single-sized messenger RNA as a type I membrane glycoprotein. Journal of Biological Chemistry 273: 4171-4179.
16. Baum, B.S., Schultz, M.P., Tian, A., Shefter, B., Wolf, E.J., Kwon, H.J., and Shim, J.K. 2013. Amputee Locomotion: Determining the Inertial Properties of Runnning-Specific Prostheses. Arch Phys Med Rehabil S0003-9993(13) 00243-00248. DOI: 10.1016/j.apmr.2013.03.010.
17. Beadell, A.V., Liu, Q., Johnson, D.M., and Haag, E.S. 2011. Independent recruitments of a translational regulator in the evolution of self-fertile nematodes PNAS 108 (49): 19672-19677.
18. Beckett, D. and Daniels, K.G. 2010. Biochemical Properties and Biological Function of a Monofunctional Microbial Biotin Protein Ligase. Biochemistry. 49: 5358-5365.
19. Beildeck, C.L., Liu, M.J., Brindza, M.R., and Walker, R. A. 2005. Solvation of p‑nitrophenol at a water/alkane interface: The roles of ionic strength and salt identity. J. Phys. Chem. B. 109: 14604-14610.
20. Belew, A.T., Hepler, N.L., Jacobs, J.L., and Dinman, J.D. 2008. PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals. BMC Genomics 9: 339.
21. Belyy, V., Anishkin, A., Kamaraju, K., Liu. N., and Sukharev, S. 2010. The tension-transmitting 'clutch' in the mechanosensitive channel MscS. Nature Structural & Molecular Biology 17: 451–458.
22. Belyy, V., Kamaraju, K., Akitake, B., Anishkin, A., and Sukharev, S. 2010. Adaptive behavior of bacterial mechanosensitive channels is coupled to membrane mechanics. JGP 135(6): 641-652.
23. Benson, S. A., Higgins, B. P., Chae, C. S., and Lin, Y. 2001. Antibacterial synergy in rubricine: an extract from the roots of Arnebia euchroma a Chinese medicinal herb. Pp. 111-124 In L. Yuan (ed.) Drug Discovery and Traditional Chinese Medicine. Kluwer Academic, Boston.
24. Birge, L.M., Pitts, M.L., Baker, R.H., and Wilkinson, G.S. 2010. Length Polymorphism and Head Shape Association Among Genes with Polyglutamine Repeats in Stalk-Eyed Fly, Teleopsis Dalmanni. BMC Evolutionary Biology 10: 227. DOI: 10.1186/1471-2148-10-227
25. Borgia, G., Egeth, M., Uy, J.A.C., and Patricelli, G.L. 2004. Juvenile infection and male display: testing the bright male hycpothesis across individual life histories. Behav. Ecol. 15: 722-728.
26. Brauth S.E., Liang, W., and Amateau, S.K. 2005. Sexual dimorphism of vocal control nuclei in budgerigars (Melopsittacus undulatus) revealed with Nissl and NADPH-d staining. Journal of Comparative Neurology 484(1): 15-27.
27. Bretz, J, Mock, N., Charity, J., Zeyad, S., Baker, C.J., and Hutcheson, S.W. 2003. A translocated protein tyrosine phosphatase of Pseudomonas syringae pv. tomato DC3000 modulates plant defense response to infection. Molecular Microbiology 49: 389-400
28. Buch, E.R., Young, S., and Contreras-Vidal, J.L. 2003. Visuomotor adaptation in normal aging. Learning & Memory 10: 55-63.
29. Buran B.N., Deng, X., and Popper A.N. 2005. Structural variation in the inner ears of four deep-sea elopomorph fishes. J. Morphol. 265: 215-25.
30. Burch, C.L., Danaher, R. J., and Stein, D.C. 1997. Antigenic variation in Neisseria gonorrhoeae: production of multiple lipooligosaccharides. J. Bacteriol. 179: 982-986.
31. Burke, M.C., Oei, M.S., Edwards, N.J., Ostrand-Rosenberg, and S. Fenselau, C. 2014. Ubiquitinated proteins in exosomes secreted by myeloid-derived suppressor cells. J. Proteome Res. 13: 5965-5972.
32. Burnett, C.A., Lagona, J., Wu, A., Shaw, J.A., Coady, D., Fettinger, J.C., Day, A.I., and Isaacs, L. 2003. Preparation of Glycoluril Monomers for Expanded Cucurbit[n]uril Synthesis. Tetrahedron, 59: 1961-1970.
33. Caldovic, L., Morizono, H., Panglao, M.G., Lopez, G.Y., Shi, D., Summar, M.L., and Tuchman, M. 2005. Late onset N-acetylglutamate synthase deficiency caused by hypomorphic alleles. Human Mutation 25(3): 293-298.
34. Can, S.Z., Chang, C.F., and Walker, R.A. 2008. Spontaneous formation of DPPC monolayers at aqueous/vapor interfaces and the impact of charged surfactants. Biochmica et Biophysica Acta – Biomembranes 1778: 2368-2377.
35. Can, S.Z., Mago, D.D., and Walker, R.A. 2006. Structure and Organization of Hexadecanol Isomers Adsorbed to the Air/Water Interface. Langmuir 22: 8043-8049.
36. Can, S.Z., Mago, D.D., Esenturk, O., and Walker, R.A. 2007. Balancing hydrophobic and hydrophilic forces at the water/vapor interface: surface structure of soluble alcohol monolayers. J Phys. Chem. C 111: 8739-8748.
37. Charity, J., Pak, K., Delwiche, C.F., and Hutcheson, S. 2003. Novel exchangeable effector loci associated with the hrp pathogenicity island of P. syringae: evidence for integron-like assembly from transposed gene cassettes. Molecular Plant Microbe Interactions, 16: 495-507.
38. Chattopadhyay, M., Kuhlmann, M.M., Kumar, K., and Simon, A.E. 2014. Position of the kissing-loop interaction associated with PTE-type 3′CITEs can affect enhancement of cap-independent translation, Virology 458–459: 43-52, DOI: 10.1016/j.virol.2014.03.027.
39. Cho, D., Villiers, F., Kroniewicz, L., Seo, Y.J., Lee, S., Hirschi, K.D., Leonhardt, N., and Kwak, J.M. 2012. Vacuolar CAX1 and CAX3 Influence Auxin Transport in Guard Cells via Regulation of Apoplastic pH. Plant Physiology 160: 1293-1302. DOI: 10.1104/pp.112.201442
40. Cho, S.I., Choi, D. H., Kim, S.H., and Lee, S.B. 2005. Electrochemical Synthesis and Ultrafast Electrochromics of Poly(3,4-ethylenedioxythiophene) Nanotubes in Flexible Substrate. Chemistry of Materials (Communication) 17: 4564-4566.
41. Chuenchor, W., Doukov, T.I., Resto, M., Chang, A., and Gerratana, B. 2012. Regulation of the Intersubunit Ammonia Tunnel in Mycobacterium Tuberculosis Glutamine-Dependent NAD(+) Synthetase. Biochemical Journal 443: 417-426. DOI: 10.1042/BJ20112210
42. Code, R.A., Darr, M.S., and Carr, C.E. 1996. Chick cochlear efferent neurons are not immunoreactive for calcitonin gene-related peptide. Hearing Research, 97: 127-135.
43. Cohen, A. H., Abdelnabi, M., Bent, B., Coleman, C., Guan, L., Mitra, A., Ottinger, M.A., and Chakrabarti, L. 2005. Changes in distribution of serotonin induced by spinal injury in larval lampreys: evidence from immunohistochemistry and HPLC. J. Neurotrauma 22: 172-188.
44. Cohen, A.H., Guan, L., Harris, J., Jung, R., and Kiemel, T. 1996. Interaction between the caudal brainstem and the lamprey central pattern generator for locomotion. Neuroscience 74: 1161-1173.
45. Cohen, A.H., Kiemel, T., Pate, V., Blinder, J., and Guan, L. 1999. Temperature can alter the functional outcome of spinal cord regeneration in larval lampreys. Neuroscience, 90: 957-965.
46. Coleman, A.S., Yang, X., Shroder, D., Kenedy, M., Anderson, J.F., Atkins, D.R., and Pal, U. 2008. Borrelia burgdorferi Complement Regulator-Acquiring Surface Protein 2 Does Not Contribute to Complement Resistance or Host Infectivity. PLoS ONE 3(8): e3010.
47. Colley, D., London, E., Jiang, B., Khural, J., Castonguay, T. Johnston, B.M., and Collins, A.B. 2012. Fructose and the control of food intake. Fructose: Synthesis, Functions and Health Implications: 131-143.
48. Contreras-Vidal, J.L. and Gold D.R. 2004. Dynamic estimation of hand position is abnormal in Parkinson’s disease. Parkinsonism and Related Disorders 10: 501-506.
49. Cunningham, F.X., Lee, H., and Gantt, E. 2007. Carotenoid biosynthesis in the primitive red alga Cyanidioschyzon merolae. 2007. Eukaryotic Cell 6: 533-545.
50. Cushing, B.S., Mogekwu, N., Le, W.W., Hoffman, G.E., and Carter, C.S. 2003. Cohabitation induced Fos immunoreactivity in the monogamous prairie vole. Brain Research. 965(1-2): 203-211.
51. Cushing, B.S., Okorie, U., and Young, L.J. 2003. The Effects of Neonatal Castration on the Subsequent Behavioural Response to Centrally Administered Arginine Vasopressin and the Expression of V1a Receptors in Adult Male Prairie Voles. Journal of Neuroendocrinology. 15 (11): 1021-1026.
52. Daggett, K.A., Layer, M., and Cropp, T.A. 2009. A General Method for Scanning Unnatural Amino Acid Mutagenesis. ACS Chemical Biology Letters 4(2) 109-113.
53. Daly, K., Tracy, A., Francke-Carroll, S., Wang, T., Malik, M., and Magnuson, B.A. 2007. Enhanced estrogenic responses and sensitivity to azoxymethane following dietary soy isoflavone supplementation in older female rats. Food and Chemical Toxicology 45: 628-637.
54. Danaher, R. J., Levin, J. C., Arking, D., Burch, C. L., Sandlin, R., and Stein, D.C. 1995. Genetic basis of Neisseria gonorrhoeae lipooligosaccharide antigenic variation. J. Bacteriol. 177: 7275-7279.
55. Danaher, R.J., Levin, J., Arking D., Sandlin, R., and Stein, D.C. 1994. Regulation of phase variation of gonococcal lipooligosaccharide expression. In: Proceedings of the Ninth International Pathogenic Neisseria Conference. pp 32-33. J. S. Evans, S. E. Yost, M. C. J. Maiden and I. M .Feavers, eds. S. C. C., England.
56. Daniels, K.G. and Beckett, D. 2010. Biochemical properties and biological function of a monofunctional microbial biotin protein ligase. Biochemistry 49 (25): 5358-5365.
57. Danoff, E.J., Wang, X., Tung, S.H., Sinkov, N.A., Kemme, A.M., Raghavan, S.R., and English, D.S. 2007. Surfactant Vesicles for High-Efficiency Capture and Separation of Charged Organic Solutes. Langmuir 23: 8965-71.
58. Davis, S.R., Gentili-Poole, P., and Mitter, C. 2008. A revision of the Cossulinae of Costa Rica and cladistic analysis of the world species (Lepidoptera : Cossidae). Zoological Journal of the Linnean Society 154(2): 222-277.
59. Davis, J.T., Kaucher, M.S., Kotch, F.W., Iezzi, M.A., Clover, B.C., and Mullaugh, K.M. 2004. Kinetic Control in Non-Covalent Synthesis: Regioselective Ligand Exchange into a Hydrogen Bonded Assembly. Organic Letters 6: 4265 – 4268.
60. Davis J.T., Tirumala, S., Jenssen, J.R., Radler, E., and Fabris, D. 1995. Self-assembled ionophores from isoguanisine. Journal of Organic Chemistry 60: 4167-4176.
61. del Campillo, E., Abdel-Aziz, A., Crawford, D., and Patterson, S. 2004. Root cap specific expression of an endo-b-1,4-D glucanase (cellulase): a new marker to study root development in Arabidopsis. Plant Molecular Biology 56(2): 309–323, (cover article).
62. del Campillo, E., Sivacharan, G., Mettle-Amuah, D., and Heneks, J. 2012. A Tale of Two Tissues: AtGH9C1 Is an Endo-β-1,4-Glucanase Involved in Root Hair and Endosperm Development in Arabidopsis. PLOS One DOI: 10.1371/journal.pone.0049363
63. Denno, R.F., Peterson, M.A., Weaver, M.R., and Hawthorne, D.J. 2007. Life history evolution in native and introduced populations. Pages 296-310 In K.J. Tilmon, ed. The Evolutionary Biology of Herbivorous Insects: Specialization, Speciation and Radiation. University of California Press, Berkeley, CA, USA.
64. DeMuth, P., Hurley, M., Wu, C., Galanie, C., Zachariah, M.R., and DeShong, P. 2011. Mesoscale porous silica as drug delivery vehicles: Synthesis, characterization, and pH-sensitive release profiles. Microporous and Mesoporous Materials. 141: 128-134.
65. DeStefano, J., Ghosh, J., Prasad, B., and Raja, A. 1998. High fidelity of internal strand transfer catalyzed by human immunodeficiency virus reverse transcriptase. J. Biol Chem. 273: 1483-1489.
66. DeStefano, J.J., Roberts B., and Shriner, D. 1997. The mechanism of retroviral recombination: the role of sequences proximal to the point of strand transfer. Archives of Virology 142: 1797-1812.
67. Dharmadhikari, A., Lee, Y.S., Roberts, R.L., and Carter, C.S. 1997. Exploratory behavior correlates with social organization and is responsive to peptide injections in prairie voles. Integrative Neurobiology of Affiliation Annals of the New York Academy of Sciences, 807: 610-612.
68. Dickinson, B.C., Varadan, R., and Fushman, D. 2007. Effects of cyclization on conformational dynamics and binding properties of Lys48-linked di-ubiquitin. Protein Science 16(3): 369-378.
69. Dolde C.E., Mukherjee, M., Cho, C., Resar, L.M.S. 2002. HMG-I/Y in human breast cancer cell lines. Breast Cancer Research and Treatment. 71 (3): 181-191.
70. Donaldson, G.P., Roelofs, K.G., Luo, Y., Sintim, H.O., and Lee, V.T. 2012. A rapid assay for affinity and kinetics of molecular interactions with nucleic acids. Nucleic Acids Research 40(7): e48.
71. D'Ovidio, K., Trucksess, M., Weaver, C., Horn, E., McIntosh, M., and Bean, G. 2006. Aflatoxins in ginseng roots. Food Additives and Contaminants 23(2): 174-180.
72. Dowling, M.B., Keibler, M., Kumar, R., Hess, J.R., Bochicchio, G.V., and Raghavan, S.R. 2011. A self-assembling hydrophobically modified chitosan capable of reversible hemostatic action. Biomaterials 32(13): 3351-3357.
73. Driscoll, M.K., Albanese, J.L., Xiong, Z.M., Mailman, M., Losert, W., and Cao, K. 2012. Anautomated image analysis of nuclear shape: What can we learn from a prematurely aged cell? AGING 4(2): 1-14.
74. Durand, S., Heaton, J., Amateau, S., and Brauth, S. 1998. Vocal control pathways through the anterior forebrain of a parrot (Melopsittacus undulatus). Journal of Comparative Neurology 377(2): 179-206.
75. Edelman, L.M., Cheong, R., and Kahn, J.D. 2003. Fluorescence resonance energy transfer over ~130 basepairs in hyperstable Lac repressor-DNA loops. Biophysical Journal 84: 1131-1145.
76. Elrick, M.J., Fluss, S., and Colombini, M. 2006. Sphingosine, a product of ceramide hydrolysis, influences the formation of ceramide channels. Biophys. J. 91: 1749-1756.
77. Epps, J.L., Jones, J.B., and Tanda, S. 1997. Oroshigane, a new segment polarity gene of Drosophila melanogaster, functions in hedgehog signal transduction. Genetics 145: 1041-1052.
78. Eriksson de Rezende, C., Anriany, Y., Carr, L.E., Joseph, S.W., and Weiner, R.M. 2005. Capsular polysaccharide surrounds smooth and rugose types of Salmonella enterica serovar Typhimurium DT104. Applied and Environmental Microbiology 71(11): 7345–7351.
79. Eriksson de Rezende, C.L., Mallinson, E.T., Gupte, A., and Joseph, S.W. 2001. Salmonella spp. are affected by different levels of water activity in closed microcosms. Journal of Industrial Microbiology and Biotechnology 26(4): 222-225.
80. Escobar-Páramo, P., Ghosh, S., and DiRuggiero, J. 2005. Evidence for genetic drift in the diversification of a geographically isolated population of the hyperthermophilic archaeon Pyrococcus. Mol. Biol. Evol. 22: 2297-2303
81. Evans D.R., Huang, M., Seganish, W.M., Chege, E.W., Lam, Y.F., Fettinger, J.C., and Williams, T.L. 2002. Cyclometalated products of [(COE)(2)RhCl](2) and 1,3-(RSCH2)(2)C6H4 (R = Bu-t, Pr-i) are dimeric. Synthesis, molecular structures, and solution dynamics of [mu-ClRh(H)(RSCH2)(2)C6H3-2,6](2). Inorganic Chemistry 41 (10): 2633-2641.
82. Evans, D.R., Huang, M.S., Seganish, W.M., Fettinger, J.C., and Williams, T.L. 2002. Synthesis, structures, and solution behavior of bis(sulfoxide)-pincer complexes of palladium(II). Organometallics 21: 893-900
83. Evans, D.R., Huang, M.S., Seganish, W.M., Fettinger, J.C., and Williams, T.L. 2003. Facile access to enantiomerically pure bis(sulfoxide) chelates of late transition metals. Inorganic Chemistry Communications 6 (5): 462-465.
84. Fakhari, F., Chen, Y.K., and Rokita, S.E. 2013. Enhancing Excess Electron Transport in DNA. Chemistry Community 49: 7073-7075
85. Falco, E.E., Wang, M.O., Thompson, J.A., Chetta, J.M., Yoon, D.M., Li, E.Z., Kulkami, M.M., Shah, S., Pandit, A., Roth, J.S., and Fisher, J.P. Porous EH and EH-PEG Scaffolds as Gene Delivery Vehicles to Skeletal Muscle. Pharmaceutical Research. 28: 1306-1316 (2011).
86. Falk, B., Williams, T., Aytekin, M., and Moss, C.F. 2011. Adaptive Behavior for Texture Discrimination by the Free-flying Big Brown Bat. Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology 197: 491-503. DOI 10.1007/s00359-010-0621-6
87. Field, A.E., Wagage, S., Conrad, S.M., and Mosser, D.M. 2007. Reduced pathology following infection with transgenic Leishmania major expressing murine CD40 ligand. Infection and Immunity 75: 3140-49.
88. Fisher, A.S., Khalid, M.B., and Kofinas, P. 2012. Block Copolymer Electrolyte with Sulfur-based Ionic Liquid for Lithium Batteries. Journal of the Electrochemical Society 159(12): A2124-A2129. DOI: 10.1149/2.066212jes
89. Fisher, A.S., Khalid, M.B., Widstrom, M., and Kofinas, P. 2012. Anion Effects on Solid Polymer Electrolytes Containing Sulfur Based Ionic Liquid for Lithium Batteries. Journal of the Electrochemical Society 159(5): A592-A597. DOI: 10.1149/2.089205jes
90. Fishwick, K., Jhingory, S., Neiderer, T., Bronner, M., and Taneyhill, L. 2012. The tight junction protein claudin-1 regulates cranial neural crest cell emigration. Mechanisms of Development, DOI: 10.1016/j.mod.2012.06.006.
91. Friedlander, T.P., Horst, K.R., Regier, J.C., Mitter, C., Peigler, R.S., and Fang, Q.Q. 1998. Two nuclear genes yield concordant relationships within Attacini (Lepidoptera : Saturniidae). Molecular Phylogenetics and Evolution 9: 131-140.
92. Friedman, J.E., Watson, J.A. Jr., Lam, D.W.H., and Rokita, S.E. 2006. Iodtyrosine deiodinase is the first mammalian member of the NADH Oxidase/Flavin Reductase superfamily. J. Biol. Chem. 281:2812-2819.
93. Gaines, C.A., Hare, M.P., Beck, S.E., and Rosenbaum, H.C. 2005. Nuclear markers confirm taxonomic status and relationships among highly endangered and closely related right whale species. Proc. Roy. Soc. Lond. 272(1562): 533-542.
94. Gallo, P., Gonçalves, R., and Mosser, D.M. 2010. The influence of IgG density and macrophage Fc (gamma) receptor cross-linking on phagocytosis and IL-10 production. Immunology Letters 133(2): 70-77.
95. Ghaffarian, R., Bhowmick, T., and Muro, S. 2012. Transport of Nanocarriers Across Gastrointestinal Epithelial Cells by a New Transcellulat Route Induced by Targeting ICAM-1. Journal of Controlled Release 163(1): 25-33. DOI: 10.1016/j.jconrel.2012.06.007
96. Ghaffarian, R., Bhowmick, T., and Muro, S. 2012. Transport of alpha-Galactosidase Coupled to ICAM-1-Targeted Nanocarriers Across Gastrointestinal Epithelial Cells. Molecular Genetics and Metabolism 105(2): S30-S30. DOI: 10.1016/j.ymgme.2011.11.059
97. Gangaramani, D.R., Eden, E.L., Shah, M., and Destefano, J.J. 2010. The tweny-nine amino acid C-terminal cytoplasmic domain of poliovirus 3 AB is critical for nucleic acid chaperone activity. RNA Biology 7: 820-829.
98. Garver, L.S., Wu, J., and Wu, L.P. 2006. The peptidoglycan recognition protein PGRP-SC1a is essential for Toll signaling and phagocytosis of Staphylococcus aureus in Drosophila PNAS, 103: 660-665
99. Goel, A., Jiang, B., Xu, L.W., Song, L., Kirkwood, A., and Lee, H.K. 2006. Cross-modal regulation of synaptic AMPA receptors in primary sensory cortices by visual experience. Nature Neuroscience 9: 1001-1003.
100. Gonen, Z.S., Paluchowski, D., Zavalij, P., Eichhorn, B.W., and Gopalakrishnan, J. 2006. Reversible cation/anion extraction from K2La2Ti3O10: Formation of new layered titanates, KLa2Ti3O9.5 and La2Ti3O9. Inorganic Chemistry 45: 8736-8742.
101. Goregaoker, S.P., Eckhardt, L.G., and Culver, J.N.. 2000. Tobacco mosaic virus replicase-mediated cross-protection: Contributions of RNA and protein-derived mechanisms. Virology, 273: 267-275.
102. Gorlatova, N., Chao, K., Pal, L.R., Araj, R. H., Galkin, A., Turko, I., Moult, J., and Herzberg, O. 2011. Protein Characterization of a Candidate Mechanism SNP for Crohn's Disease: The Macrophage Stimulating Protein R689C Substitution. PLoS ONE 6(11) 1-12.
103. Gowetski, D.B., Kodis, E.J., and Kahn, J.D. 2013. Rationally Designed Coiled-Coil DNA Looping Peptides Control DNA Topology. Nulceic Acids Research 1-13 DOI: 10.1093/nar/gkt553
104. Gupta, A., Terrell, J.L., Fernandes, R., Dowling, M.B., Payne, G.F., Raghavan, S.R., and Bentley, W.E. 2013. Encapsulated Fusion Protein Confers “Sense and Respond” Activity to Chitosan-alginate Capsules to Manipulate Bacterial Quorum Sensing. Biotechnology and Bioengineering 110(2): 552-562. DOI: 10.1002/bit.24711
105. Haag, E.S. and Ackerman, A.D. 2005. Intraspecific variation in fem-3 and tra-2, two rapidly coevolving nematode sex-determining genes. Gene 349: 35-42.
106. Hall W.S., Cookson, K.K., Heaton, J.T., Roberts, T.F., Shea, S.D., Amateau, S.K., and Brauth, S.E. 1999. Cytoarchitecture of Vocal Control Nuclei in Nestling Budgerigars: Relationships to Call Development. Brain, Behavior and Evolution 53: 198-226.
107. Haririnia, A., Verma, R., Purohit, N., Twarog, M.Z., Deshaies, R.J., Bolon, D., and Fushman, D. 2006. Mutations in the Hydrophobic Core of Ubiquitin Differentially Affect its Recognition by Receptor Proteins. J. Mol. Biol. 375: 979-996.
108. Harrell, W.A., Bergmeyer, M.L., Zavalij, P.Y., and Davis, J.T. 2010. Ceramide-mediated transport of chloride and bicarbonate across phospholipid membranes. Chem. Commun. 46: 3950-3952.
109. Haspel, G., Schwartz, A., Streets, A., Camacho, D.E., and Soares, D. 2012. By the skin of their teeth, cavefish find their way. Current Biology 22(16): R629-30.
110. Hathout, Y., Riordan, K., Gehrmann, M., and Fenselau, C. 2002. Differential protein expression in the cytosol fraction of an MCF-7 breast cancer cell line selected for resistance toward melphalan. Journal of Proteome Research 1: 435-442.
111. He, K., Lee, A., Song, L., Kanold, P.O., and Lee, H.K. 2011. AMPA receptor subunit GluR1 (GluA1) serine-845 site is involved in synaptic depression but not in spine shrinkage associated with chemical long-term depression. J Neurophysiol, 105(4):1897-907.
112. Hebert, C.G., Gupta, A., Fernandes, R., Tsao, C.Y., Valdes, J.J., and Netley, W.E. 2010. Biological nanofactories target and activate epithelial cell surface for modulating bacterial quorum sensing and interspecies signaling. ACS Nano 4(11): 6923-31.
113. Helz, G.R., Vorlicek, T.P., and Kahn, M.D. 2004. Molybdenum scavenging by iron monosulfide. Environ. Sci. Technol. 38: 4263-4268.
114. Hettiarachchi, G., Nguyen, D., Wu, J., Lucas, D., Ma, D., Isaacs, L., and Briken, V. 2010. Toxicology and Drug Delivery by Cucurbit[n]uril Type Molecular Containers. PLoS ONE 5(5): 1-10.
115. Hill, R.C., Carvalho, C., Salogiannis, J., Schlager, B., Pilgrim, D., and Haag, E.S. 2006. Genetic flexibility in the convergent evolution of hermaphroditism in Caenorhabditis nematodes. Dev. Cell 10: 531-538.
116. Hoffman, G.E., Sanchez Puerta, M.V., and Delwiche, C. 2011. Evolution of light-harvesting complex proteins from Chl c containing algae. BMC Evolutionary Biology doi: 10.1186/1471-2148-11-101.
117. Hoke, K., Schwartz, A., and Soares, D. 2012. Evolution of the fast start response in the cavefish Astyanax mexicanus. Behavioral Ecology and Sociobiology vol. 66 (8): 1157–1164.
118. Hondorp, E.R., Hou, S.C., Hempstead, A.D., Hause, L.L., Beckett, D.M., and McIver, K.S. 2012. Characterization of the Group A Streptococcus Mga Virulence Regulator Reveals a Role for the C-terminal Region in Oligomerization and Transcriotional Activation. Molecular Microbiology 83(5): 953-967. DOI: 10.1111/j.1365-2958.2012.07980.x
119. Hutcheson, S.W., Bretz, J., Sussan, T., Jin, S., Heu, S., and Pak, K. 2001. The enhancer binding proteins HrpR and HrpS interact to regulate type III protein secretion in Pseudomonas syringae strains. J. Bacteriology, 183: 5589-5598.
120. Ji, X., von Rosenvinge, E.C., Johnson, W.W., Armstrong, R.N., and Gilliland, G.L. 1996. Location of a Potential Transport Binding Site in a Sigma Class Glutathione Transferase by X-ray Crystallography. Proceedings National Academy of Science U.S.A. 93: 8208-8213.
121. Ji, X., von Rosenvinge, E.C., Johnson, W.W., Tomarev, S.I., Piatigorsky, J., Armstrong, R.N., and Gilliland, G.L. 1995. Three-dimensional structure, catalytic properties, and evolution of a sigma class glutathione transferase from squid, a progenitor of the lens S-crystallins of cephalopods. Biochemistry 34: 5317–5328.
122. Jirage D., Tootle, T.L., Reuber, T.L., Frost, L.N., Feys, B.J., Parker, J.E., Ausubel, F.M., and Glazebrook, J. 1999. Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling. P. Natl. Acad. Sci. 96: 13583-13588.
123. Jo, S., Lim, J.B., Klauda, J.B., and Im, W. 2009. CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranes. Biophysical Journal 97(1): 50-58.
124. Jo, S., Rui, H., Lim, J.B., Klauda, J.B., and Im, W. 2010. Cholesterol Flip-Flop: Insights from Free Energy Simulation Studies. J. Phys. Chem. B 114: 13342–13348.
125. Johns, P.M., Howard, K.J., Breisch, N.L., Rivera, A., and Thorne, B.L. 2009. Nonrelatives inherit colony resources in a primitive termite. Proceedings of the National Academy of Sciences, U.S.A. 106: 17452-17456.
126. Johnson, C., Boden, E., Desai, M., Pascuzzi, P., and Arias, J. 2001. In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant Journal 28: 237-243.
127. Johnson, C., Boden, E., and Arias, J. 2003. Salicylic Acid and NPR1 Induce the Recruitment of trans-Activating TGA Factors to a Defense Gene Promoter in Arabidopsis. Plant Cell 8: 1846–1858.
128. Ju C., Van de Poel, B., Cooper, E.D., Thierer, J., Gibbons, T.R., Delwiche, C.F., and Chang, C. 2015. Conservation of ethylene as a plant hormone over 450 million years of evolution, Nature Plants, accepted.
129. Kahn, Jason, D., Cheong, R., Mehta, R.A. Edelman, L.M., and Morgan, M.A. 2006. Flexibility and Controlof Protein-DNA Loops. Biophysical Reviews and Letters 1 (4): 327-341.
130. Kelleher, D.F., deCarvalho, C.E., Doty, A.V., Layton, M., Cheng, A.T., Mathies, L.D., Pilgrim, D., and Haag, E.S. 2008. Comparative genetics of sex-determination: Masculinizing mutations in Caenorhabditis briggsae. Genetics 178: 1415-1429.
131. Keslani, B., Halsig, J., Zavalij, P., Fettinger, J.C., Lam, Y.F., and Eichhorn, B. 2007. Cluster Growth and Fragmentation in the Highly Fluxional Platinum Derivatives of [Sn9]4-: Synthesis, Characterization and Solution Dynamics of [Pt2@Sn17]4- and [Pt@Sn9H]3-. J. Am. Chem. Soc. 129: 4567-4574.
132. Kim, W., Koo, H., Richman, A.M., Seeley, D., Vizioli, J., Klocko, A.D., and O'Brochta, D.A. 2004. Ectopic expression of a cecropin transgene in the human malaria vector mosquito Anopheles gambiae (Diptera : Culicidae): Effects on susceptibility to Plasmodium. Journal of Medical Entemology 41: 447-455.
133. Klinedinst, S., Pascuzzi, P., Redman, J., Desai, M., and Arias, J. 2000. A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Molecular Biology 42: 679-688.
134. Kostek, M.C., Delmonico, M.J., Reichel, J.B., Roth, S.M., Douglass, L., Ferrell, R.E., and Hurley, B.F. 2005. Muscle strength response to strength training is influenced by insulin-like growth factor 1 genotype in older adults. Journal of Applied Physiology 98: 2147-2154.
135. Kotch, F.W., Sidorov, V., Kayser, K.J., Kaucher, M., Li, H., Lam, Y., and Davis, J.T. 2003. Water-Mediated Assembly Provides a Noncovalent Ion Pair Receptor. Journal of the American Chemical Society 125: 15140-15150.
136. Kreczko, A., Goel, A., Song, L., and Lee, H.K. 2009. Visual deprivation decreases somatic GAD65 puncta number on layer 2/3 pyramidal neurons in mouse visual cortex. Neural Plasticity 2009: 415135.
137. Kreeger, L., Arshed, A., and MacLeod, K. 2012. Intrinsic firing properties in the avian auditory brain stem allow both integration and encoding of temporally modulated noisy inputs in vitro. Journal of Neurophysiology. Doi:10.1152/jn.00092.2012.
138. Kubke, M.F., Gauger, B., Basu, L., Wagner, H., and Carr, C.E. 1999. Development of calretinin immunoreactivity in the brainstem auditory nuclei of the barn owl (Tyto alba). Journal of Comparative Neurology 415: 189-203.
139. Kulp, R. E., Politano, V., Lane, H.A., Lombardi, S.A., and Paynter, K.T. 2011. Predation of juvenile Crassostrea virginica by two species of mud crabs found in the Chesapeake Bay. J. Shellfish Res. 30: 261-266.
140. Lamp, W.O., Alexander, L.C., and Nguyen, M. 2007. Physiological responses of glandular-haired alfalfa to potato leafhopper (Hemiptera: Cicadellidae) injury. Environ. Entomol. 36(1): 195-203.
141. Lee, C.Y., Clough, E., Yellon, P., Teslovich, T., Stephan, D., and Baehrecke, E.H. 2003. Genome-wide analysies of steroid- and radiation-triggered programmed cell death in Drosophila. Current Biology 13: 350-357.
142. Li, W., Khullar, A., Chou, S., Sacramo, A., and Gerratana, B. 2009. Biosynthesis of Sibiromycin, a Potenet Antitumor Antibiotic. Applied and Environmental Microbiology 75(9): 2869-2878. DOI: 10.1128/AEM.02326-08
143. Li, W., Chou, S., Khullar, A., and Gerratana, B. 2009. Cloning and Characterization of the Biosynthetic Gene Cluster for Tomaymycin an SJG-136 Monomeric Analog. Applied and Environmental Microbiology 75(9): 2958-2963. DOI: 10.1128/AEM.02325-08
144. Lieberman, O.J., DeStefano, J.J., and Lee, V.T. 2013. Detection of Cyclic Diguanylate G-Octaplex Assembly and Interaction with Proteins. PLoS ONE 8(1): e53689.
145. Liesch, G.R. and DeStefano, J.J. 2003. Analysis of mutations made during active synthesis or extension of mismatched substrates further define the mechanism of HIV-RT mutagenesis. Biochemistry 42: 5925-5936.
146. Lim, J.B. and Klauda, J.B. 2011. Lipid chain branching at the iso- and anteiso-positions in complex chlamydia membranes: A molecular dynamics study. Biochimica et Biophysica Acta (BBA) - Biomembranes 1808: 1323-1331.
147. Lim, J.B., Rogaski, B., and Klauda, J.B. 2012. Update of the Cholesterol Force Field Parameters in CHARMM. J. Phys. Chem. B 116: 203-210.
148. Lioi, S.B., Wang, X., Islam, M.R., Danoff, E., and English, D.S. 2009. Catanionic surfactant vesicles for electrostatic molecular sequestration and separation. Physical Chemistry Chemical Physics 11 (41): 9315-9325.
149. Liu, I.A., Lohr, B., Olsen, B., and Greenberg, R. 2008. Macrogeographic vocal variation in subspecies of Swamp Sparrow. Condor 110 (1): 102-109.
150. Lombardi, S.A., Chon, G.D., Lee, J.J.W., Lane, H.A., and Paynter, K.T. Shell hardness and compressive strength of the Eastern oyster, Crassostrea virginica, and the Asian oyster, Crassostrea ariakensis. Biological Bulletin 225 (3), pp. 175-183
151. London, E., Lala, G., Berger, R., Kholi, A., Panzenbeck, A., Renner, M., Jackson, A., Raynor, T., Loya, K., and Castonguay, T.W. 2007. Sucrose access differentially modifies 11 beta-hydroxysteroid dehydrogenase-1 and hexose-6-phosphate dehydrogenase message in liver and adipose tissue in rats. Journal of Nutrition 137: 2616-2621.
152. Losada, L., Pak, K., Sussan, T., Zeyad, S., Rozenbaum, I., and Hutcheson, S.W. 2004. Identification of a novel virulence and avirulence determinant of Pseudomonas syringae Psy61 by a HrpL-dependent promoter trap assay. Molecular Plant Microbe Interactions 17: 252-264.
153. Luo, Y., Zhou, J., Watt, S.K., Lee, V.T., Dayie, T.K., and Sintim, H.O. Differential Binding of 2 ‘-Biotinylated Analogs of c-di-GMP with c-di-GMP Riboswitches and Binding Proteins. Molecular Biosystems 8(3): 772-778. DOI: 10.1039/c2mb05338a
154. Ma, D., Hettiarachchi, G., Nguyen, D., Zhang, B., Wittenberg, J.B., Zavalij, P.Y., Briken, V., and Isaacs, L. 2012. Acyclic cucurbit[n]uril molecular containers enhance the solubility and bioactivity of poorly soluble pharmaceuticals. Nature Chemistry OID: 10.1038/NCHEM.1326.
155. Ma, L., Iezzi, M.A., Kaucher, M.S., Lam, Y.F., and Davis, J.T. 2006. Cation Exchange in Lipophilic G-Quadruplexes: Not All Ion Binding Sites are Equal. J. Am. Chem. Soc. 128: 15269-15277.
156. Mandler, M. D., Truong, P.M., Zavalij, P.Y., and Doyle, M.P. 2014. Catalytic Conversion with Diazocarbonyl Compounds and Applications to the Synthesis of Tetrahydropyrimidines and β-Lactams. Org. Lett. 16: 740-743.
157. Martin, D.N., Balgley, B., Dutta, S., Chen, J., Cranford, J., Kantartzis, S., Rudnick, P., DeVoe, D.L., Lee, C., and Baehrecke, E.H. 2007. Proteomic analysis of steroid-triggered autophagic programmed cell death during Drosophila development. Cell Death and Differentiation 14: 916-923.
158. McCormack, J.C., Yuan, X., Yingling, Y.G., Zamora, R.E., Shapiro, B.A., and Simon, A.E. 2008. Structural domains within the 3' UTR of Turnip crinkle virus. J. Virol. 82: 8706-8720.
159. McCrane, M.P., Hutchinson, M.A., Ad, O., and Rokita, S.E. 2014. Oxidative quenching of quinone methide adducts reveals transient products of reversible alkylation in duplex DNA. Chemical Research in Toxicology 27(7): 1282-1293.
160. Mehta, B., Ke, J.B., Zhang, L., Baden, A.D., Markowitz, A.L., Nayak, S., Briggman, K.L., Zenisek, D., Singer, J.H. 2014. Global Ca2+ signaling drives ribbon-independent synaptic transmission at rod bipolar cell synapses. J Neurosci. 34(18): 6233-44. (http://www.ncbi.nlm.nih.gov/pubmed/?term=24790194)
161. Mendelson, T.C., Siegel, A.M., and Shaw, K.L. 2004. Testing geographic pathways of speciation in a recent island radiation. Molecular Ecology 13 (12): 3787-3796.
162. Minal, P., Betz, M.W., Geibel, E.M., Patel, K.J., Caccamese, J.F., Coletti, D.P., Sauk, J.J., and Fisher, J.P. 2010. Cyclic Acetal Hydroxyapatite Nanocomposites for Orbital Bone Regeneration. Tissue Engineering Part A 16(1): 55-65.
163. Misra, A., Conway, M.F., Johnnie, J., Qureshi, T.M., Lige, B., Derrick, A.M., Agbo, E.C., and Sriram, G. 2013. Metabolic analyses elucidate non-trivial gene targets for amplifying dihydroartemisinic acid production in yeast. Frontiers in Microbiology 4: Article 200.
164. Murren, C.J., Chang, C., and Dudash, M.R. 2009. Patterns of selection of two North American native and non-native populations of Monkeyflower (Phyrmaceae). New Phytologist 183: 691-701.
165. Norman, A.I., Manvilla, B.A., Frank, E.L., Niamke, J.N., Smith, G.D., and Greer, S.C. 2008. Partitioning of Poly(ethylene oxide), Poly(ethyleneimide), and Bovine Serum Albumin in Isobutyric Acid + Water," Macromolecules 41(3): 997-108.
166. Nunez-Parra, A., Pugh, V., and Araneda, R.C. 2011. Regulation of adult neurogenesis by behavior and age in the accessory olfactory bulb. Molecular and Cellular Neuroscience 47: 274-285.
167. Nunez-Parra, A., Maurer, R.K., Krahe, K., Smith, R.S., and Araneda, R.C. 2013. Disruption of Centrifugal Inhibition to Olfactory Bulb Granule Cells Impairs Olfactory Discrimination. National Academy of Science 110: 14777-14782. DOI: 10.1073/pnas.1310686110
168. O’Connor, E.T., Swanson, K.V., Cheng, H., Fluss, K., Griffiss, J.M., and Stein, D.C. 2008. Structural Requirements for Monoclonal Antibody 2-1-L8 Recognition of Neisseria Lipooligosaccharides. Hybridoma 27(2): 71-79.
169. Okunola, O.A., Seganish, J.L., Salimian, K.J., Zavalij, P.Y., and Davis, J.T. 2007. Membrane-active calixarenes: toward 'gating' transmembrane anion transport. Tetrahedron 63(44): 10743-10750.
170. Oliveira, M.A., Hsu, J., Park, J., Clark, J.E., and Shim, J.K. 2008. Age-related changes in multi-finger interactions in adults during maximum voluntary finger force production tasks. Human Movement Science 27: 714-727.
171. Olson, E.R., Dively, G.P., and Nelson, J.O. 2004. Bioassay determination of the distribution of imidacloprid in potato plants: implications to resistance development. J. Econ. Entomol. 97: 614-620
172. Padmanabhan, M.S., Shiferaw, H., and Culver, J.N. 2006. The Tobacco mosaic virus Replicase Protein Disruptsthe Localization and Functionof Interacting Aux/IAA Proteins. Molecular Plant-Microbe Interactions 19: 864–873.
173. Padmanabhan, M.S., Goregaoker, S.P., Golem, S., Shiferaw, H., and Culver, J.N. 2005. Interaction of the Tobacco Mosaic Virus Replicase Protein with the Aux/IAA Protein PAP1/IAA26 Is Associated with Disease Development. J Virol. 79: 2549–2558.
174. Palmer, M.A., Swan, C.M., Nelson, K., Silver, P., and Alvestad, R. 2000. Streambed landscapes: evidence that stream invertebrates respond to the type and spatial arrangement of patches. Landscape Ecology 15(6): 563-576.
175. Panhius, T.M. and Wilkinson, G.S. 1999. Exaggerated male eye span influences contest outcome in stalk-eyed flies (Diopsidae). Behavioral Ecology and Sociobiology 46: 221-227.
176. Park, J., Rader, L.H., Thomas, G.B., Danoff, E.J., English, D.S., and DeShong, P. 2008. Carbohydrate-functionalized cationic surfactant vesicles: Preparation and lectin-binding studies. Soft Matter 4: 1916-1921.
177. Pascuzzi, P., Hamilton, D., Bodily, K., and Arias, J. 1998. Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. Journal of Biological Chemistry 273: 26631-26637.
178. Patel, M., Betz, M.W., Geibel, E., Patel, K.J., Caccamese, J.F., Coletti, D.P., Sauk, J.J., and Fisher, J.P. 2010. Cyclic Acetal Hydroxyapatite Nanocomposites for Orbital Bone Regeneration. Tissue Engineering Part A 16(1): 55-65. DOI: 10.1089/ten.tea.2009.0027
179. Patel, M., Dunn, T.A., Tostanoski, S., and Fisher, J.P. 2010. Cyclic Acetal Hydroxyapatite Composites and Endogenous Osteogenic Gene Expression of Rat Marrow Stromal Cells. Journal of Tissue Engineering and Regenerative Medicine. 4: 422-436.
180. Peters, J.E., Bartoszyk, I.M., Dheer, S., and Benson, S.A. 1996. Redundant homosexual F transfer facilitates selection-induced reversion of plasmid mutations. Journal of Bacteriology, 178: 3037-3043.
181. Petrov, A.N., Meskauskas, A., Roshwalb, S.C., and Dinman, J.D. 2008. Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit. Nucleic Acids Research 36: 6187-6198.6.
182. Pirone, C.L., Alexander, L.C., and Lamp, W.O. 2005. Patterns of starch accumulation in alfalfa subsequent to potato leafhopper (Homoptera: Cicadellidae) injury. Environmental Entomology. 34(1): 199-204.
183. Poliquin, K., Ershov, Y.V., Cunningham, F.X. Jr., Woreta, T.T., Gantt, R.R., and Gantt, E. 2004. Inactivation of sll1556 in Synechocystis Strain PCC 6803 impairs isoprenoid biosynthesis from pentose phosphate cycle substrates in vitro. J. Bacteriol. 186: 4685-4693
184. Prager, A.D. and Contreras-Vidal, J.L. 2003. Adaptation to display rotation and display gain distortions during drawing. Human Movement Science 22: 173-187.
185. Presgraves, D.C., Severance, E., and Wilkinson, G.S. 1997. Sex chromosome meiotic drive in stalk-eyed flies. Genetics 147: 1169-1180.
186. Presson, J.C., Smith, T., and Mentz, L. 1994. Proliferating hair cell precursors in the ear of a postembryonic fish are replaced after elimination by cytosine arabinoside. Journal of Neurobiology 26: 579-584.
187. Rappaport, J., Garnacho, C., and Muro, S. 2014. Clathrin-mediated endocytosis is impaired in type A-B Niemann-Pick disease model cells and can be restored by ICAM-1-mediated enzyme replacement. Mol Pharm 11(8):2887-95 DOI: 10.1021/mp500241y
188. Rajagopal, A., Rao, A.U., Amigo, J., Uhm, S., Tian, M., Upadhyay, S.K., Hall, C., Matthew, M.K., Fleming, M.D., Paw, B.H., Krause, M., and Hamza, I. 2008. Haem homeostasis is regulated by the conserved and concerted functions of HRG-1 proteins. Nature 453(7198): 1127-1131.
189. Raupp, M.J., Webb, R., Szczpaneic, A., Booth, D., and Ahern, R. 2004. Incidence, abundance, and severity of mites on hemlocks following applications of imidacloprid. Journal of Arboriculture 30: 108-113.
190. Regier, J.C., Grant, M.C., Peigler, R.S., Mitter, C., Cook, C.P., and Rougerie, R. 2008. Phylogenetic relationships of wild silkmoths (Lepidoptera: Saturniidae) inferred from four protein-coding nuclear genes. Systematic Entomology 33: 219-228.
191. Regier, J.C., Cook, C.P., Mitter, C., and Hussey, A. 2008. A phylogenetic study of the "bombycoid complex" (Lepidoptera) using five protein-coding nuclear genes, with comments on the problem of macrolepidopteran phylogeny. Systematic Entomology 33: 175-189.
192. Reid, M., Tirado, L., Zhang, Jianwei, Dike, N., and Herndon, J. 2005. Reaction of cyclopropylcarbene–metal complexes with nucleophiles, halogens and HX. Journal of Organometallic Chemistry 690: 5759-5776.
193. Ribak, G., Pitts, M.L., Wilkinson, G.S., and Swallow, J.G. 2009. Wing Shape, Wing Size, and Sexual Dimorphism in Eye-Span in Stalk-Eyed Flies (Diopsidae). Biological Journal of the Linnean Society 98(4): 860-871.
194. Rogaski, B., Lim, J.B., and Klauda, J.B. 2010. Sterol Binding and Membrane Lipid Attachment to the Osh4 Protein of Yeast. J. Phys. Chem. B 114: 13562–13573.
195. Roman, J., Rubin, M.N., and Woodson, S.A. 1999. Substrate specificity of in vivo reverse splicing of the Tetrahymena group I intron. RNA 5: 1-13.
196. Romaniouk, A.V., Silva, A., Feng, J., Vijay, I.K. 2004. Synthesis of a novel photoaffinity derivative of 1-deoxynojirimycin for active site-directed labeling of glucosidase I. Glycobiology 14(4): 301-10.
197. Salz, H.K., Mancebo, R.S., Nagengast, A.A., Speck, O., and Psotka, M. 2004. The Drosophila U1-70K protein is required for viability, but its arginine-rich domain is dispensable. Genetics 168: 2059-2065.
198. Seeley-Fallen, M.K., Liu, L.J., Shapiro, M.R., Onabajo, O.O., Palaniyandi, S., Zhu, X., Tan, T.H., Upadhyaya, A., and Song, W. 2014. Actin-binding protein 1 links B-cell antigen receptors to negative signaling pathways. Proc Natl Acad Sci USA 111(27):9881-6. DOI: 10.1073/pnas.1321971111.
199. Seganish, J.L., Santacroce, P.V., Salimian, K.J., Fettinger, J.C., Zavalij, P., and Davis, J.T. 2006. Regulating supramolecular function in membranes: Calixarenes that enable or inhibit transmembrane Cl- transport. Angewandte Chemie Int. Ed. 45: 3334-3338.
200. Seoll, G.H., Ziburkus, J., Huang, S., Song, L., Kim, I.T., Takamiya, K., Huganir, R.L., Lee, H.K., and Kirkwood, A. 2007. Neuromodulators Control the Polarity of Spike-Timing-Dependent Synaptic Plasticity Neuron 55: 919-929
201. Sheller, F.J., Fagan, W.F., and Unmack, P.J. 2006. Analyzing translocation success from sporadic monitoring data using survival analysis: Lessons from the Gila topminnow ( Poeciliopsis occidentalis ). Ecological Applications 16(5): 1771–1784.
202. Shi, D.H., Morizono, H., Cabrera-Luque, J., Roth, L., Yu, X.L., Malamy, M.H., Allewell, N., and Tuchman, M. 2006. Structure and catalytic mechanism of a novel N-succinyl-L-ornithine transcarbamylase in arginine biosynthesis of Bacteroides fragilis. Journal of Biological Chemistry 281(29): 20623-20631.
203. Shi, D.S., Caldovic, L., Jin, Z.M., Roth, L., Yu, X.L., Qu, Q.H., Morizono, H., Hathout, Y., Allewell, N.M., and Tuchman, M. 2006. Expression, crystallization and preliminary crystallographic studies of a novel bifunctional N-acetylglutamate synthase/kinase from Xanthomonas campestris homologous to vertebrate N-acetylglutamate synthase. Acta Crystallographica Section F-Struct. Bio. And Crystallization Comm. 62: 1218-1222.
204. Shi, D.S., Yu, X.L., Cabrera-Luque, J., Chen, T., Roth, L., Morizono, H., Allewell, N.M., and Tuchman, M. 2007. A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase. Protein Science 16 (8): 1689-1699.
205. Shi, D.S., Yu, X.L., Cabrera-Luque, J., Roth, L., Morizono, H., Allewell, N.M., and Tuchman, M. 2007. A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase. Protein Science 16(8): 1689-1699.
206. Shi, D.S., Yu, X.L., Roth, L., Morizono, H., Tuchman, M., and Allewell, N.M. 2006. Structures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis. Proteins-Structure Function and Bioinformatics 64(2): 532-542.
207. Shi, D.S., Yu, X.L., Roth, L., Tuchman, M., and Allewell, N.M. 2007. Structure of a novel N-acetyl-L-citrulline deacetylase from Xanthomonas campestris. Biophysical Chemistry 126(1-3): 86-93.
208. Shi, D., Morizono, H., Yu, X., Roth, L., Caldovic, L., Allewell, N.M., Malamy, M., and Tuchman, M. 2005. Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas Campestris: ANovel Enzyme in a New Arginine Biosynthetic Pathway Found in Several Eubacteria. J. Biol Chem. 230: 14366-14369.
209. Shi, D., Yu, X., Roth, L., Morizono, H., Hathout, Y., Allewell,, N.M., and Tuchman, M. 2005. Expression, purification, crystallization, and preliminary X-ray crystallographic Studies of a Novel Acetylctrulline Deacetylase from Xanthomonas campuestris. Acta Cryst. F61: 679-9.
210. Shih, H.C., Kassahun, H., Burrows, C.J., and Rokita, S.E. 1999. Selective Association between a Macrocyclic Nickel Complex and Extrahelical Guanine Residue. Biochemistry 38: 15034-15042.
211. Shim, J.K., Hsu, J., Karol, S., and Hurley, B.F. 2008. Strength Training Increases Training-Specific Multifinger Coordination in Humans. Motor Control 12: 311-329.
212. Shim, J.K., Karol, S., Hsu, J., and Oliveira, M.A. 2008. Hand digit control in children: motor overflow in multi-finger pressing force vector space during maximum voluntary force production. Experimental Brain Research 186: 443-456.
213. Shim, J.K., Oliveira, M.A., Hsu, J., Huang, J.F., Park, J., and Clark, J.E. 2007. Hand digit control in children: age-related changes in hand digit force interactions during maximum flexion and extension force production tasks. Experimental Brain Research 176: 374-386.
214. Shinar, H., Battistel, M.D., Mandler, M.D., Lichaa, F., Freedberg, D.I., and Navon, G. 2014. Direct Assignment of Hydroxyl Groups in Oligosialic Acids and Polysialic Acid using CEST and HSQC-TOCSY. Carbohyd. Res. 389: 165-173.
215. Shorts, L.H., Dancz, C.E., Shupp, J.W., and Pontzer, C.H. 2004. Characterization of N-Terminal Interferon tau Mutants: P26L Affords Enhanced Activity and Lack of Toxicity. Journal of Experimental Biology and Medicine 229: 194-202.
216. Shupp, J.W., Jett, M., and Pontzer, C.H. 2002. Identification of a Transcytosis Epitope on Staphylococcal Enterotoxins. Infection and Immunity 70: 2178-2186.
217. Sidorov, V., Kotch, F.W., Abdrakhmanova, G., Mizani, R., Fettinger, J.C., and Davis, J.T. 2002. Ion Channel Formation from a Calix[4]arene Amide that Binds HCl. Journal of the American Chemical Society, 124: 2267-2278.
218. Silva, A., Romaniouk, A., and Vijay, L.K. 2000. Development of a novel photoaffinity probe to map the active site of glucosidase I. FASEB Journal 14: 11-95.
219. Sims, J.J., Haririnia, A., Dickinson, B.C., Fushman, D., and Cohen, R.E. 2009. Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains. Nature Structural & Molecular Biology 16(8): 883-U112.
220. Sina, B., Bartelsandrews, L., and Ratanavanich, K. 1995. Characterization of female mosquito specific salivary-gland glycoproteins. Journal of Cellular Biochemistry 212-212 Suppl. 21A.
221. Siskind, L.J., Davoody, A., Lewin, N., Marshall, S., and Colombini, M. 2003. Enlargement and contracture of C2-ceramide channels. Biophysical Journal 85: 1560-1575.
222. Smith, R.S., Weitz, C.J., and Araneda, R.C. 2009. Excitatory actions of noradrenaline and metabotropic glutamate receptor activation in granule cells of the accessory olfactory bulb. J. Neurophys. 102(2): 1103-1114.
223. Son, S.J., Reichel, J., He, B., Schuchman, M., and Lee, S.B. 2005. Magnetic nanotubes for magnetic-field assisted bioseparation, biointeraction, and drug delivery. J. Am. Chem. Soc. 127: 7316-7317.
224. Song, W.X., Condron, S., Mocca, B.T., Veit, S.J., Hill ,D., Abbas, A., and Jerse, A.E. 2008. Local and humoral immune responses against primary and repeat Neisseria gonorrhoeae genital tract infections of 17 beta-estradiol-treated mice. Vaccine 26: 5741-5751.
225. Srivastava, S., Ruane, P.H., Toscano, J.P., Sullivan, M.B., Cramer, C.J., Chiapperino, D., Reed, E.C., and Falvey, D.E. 2000. Structures of reactive nitrenium ions: Time-resolved infrared laser flash photolysis and computational studies of substituted N-methyl-N-arylnitrenium ions. Journal of the American Chem. Society 122: 8271-8278.
226. Steel, W.H., Foresman, J.B., Lau, Y.Y., Burden, D.K., and Walker, R.A. 2009. Solvation of Nitrophenol Isomers: Consequences for Solute Electronic Structure and Water/Alkane Partitioning. J. Phys. Chem. B 113(3): 759-766.
227. Stein, D.S., Carrizosa, E., and Dunham, S. 2009. Use of nfsB, encoding nitroreductase, as a reporter gene to determine the mutational spectrum of spontaneous mutations in Neisseria gonorrhoeae. BMC Microbiology 9: 239.
228. Stroka, K.M., Vatikus, J.A., and Aranda-Espinoza, H. 2012. Endothelial Cells Undergo Morphological, Biochemical, and Dynamic Changes in Response to Tumor Necrosis Factor-Alpha. European Biophysics Journal with Biophysics Letters 41(11): 939-947. DOI: 10.1007/s00249-012-0851-3
229. Subramaniam, P.S., Khan, S.A., Pontzer, C.H., and Johnson, H.M. 1995. Differential recognition of the type I interferon receptor by interferons tau and alpha is responsible for their disparate cytotoxicities. Proceedings of the National Academy of Sciences 92: 12270-12274.
230. Suleyman, Z., Chang, C.F., and Walker, R.A. 2008. Spontaneous formation of DPPC monolayers at aqueous/vapor interfaces and the impact of charged surfactants. Biochimica et Biophysica Acta 1778: 2368-2377.
231. Tchopev, Z., Hiller, M., Zhuo, J.C., Betz, J., Gullapalli, R., and Sheth, K.N. 2013. Prediction of Poor Outcome in Cerebellar Infarction by Diffusion MRI. Neurocritical Care 19: 276-282.
232. Thakur, C., Sama, J.N., Brown, M.E., Jackson, M.E., and Dayie, T. K. 2010. Growth of wildtype and mutant E. coli strains in minimal media for optimal production of nucleic acids for preparing labeled nucleotides. Applied Microbiology and Biotechnology 88: 771-779.
233. Thakur, C., Sama, J.N., Jackson, M.E., Chen, B., and Dayie, T. K. 2010. Selective 13C labeling of nucleotides for large RNA NMR spectroscopy using an E. coli strain disabled in the TCA cycle. Journal of Biomolecular NMR 48: 179-192
234. Thorne, B.L., Breisch, N.L., and Muscedere, M.L. 2003. Evolution of eusociality and the soldier caste in termites: Influence of intraspecific competition and acceleratedinheritance. Proceedings of the National Academy of Sciences 100 (22): 12808-12813.
235. Tong, Y., Reinhold, V., Arking, D., and Stein, D.C. 2002. Neisseria gonorrhoeae strain PID2 simultaneously expresses six chemically related lipooligosaccharide structures. Glycobiology 12: 523-533.
236. Truong, P.M., Mandler, M.D., Shanahan, C.S., and Doyle, M.P. 2014. Lewis Acid Catalyzed Diastereoselective 1,3-Dipolar Cycloaddition between Diazoacetate Enones and Azomethine Ylides. Heterocycles 88: 1039-1049.
237. Truong, P.M., Mandler, M.D., Zavalij, P., and Doyle, M.P. 2013. Tetrahydroquinolines and Benzazepines through Catalytic Diastereoselective Formal [4 + 2]-Cycloaddition Reactions between Donor-Acceptor Cyclopropenes and Imines. Org. Lett. 15: 3278-3281.
238. Truong, P.M., Mandler, M.D., and Doyle, M.P. 2014. The Chemistry of Vicinal Tricarbonyls: An Expedient Route to Fully-substituted 3-Aminopyrroles” Tetrahedron Lett. DOI: 10.1016/j.tetlet.2014.10.139
239. Tuchman, M., Jaleel, N., Morizono, H., Sheehy, L., and Lynch, M.G. 2002. MuOkunola O.A., Seganish J.L., Salimian K.J., Zavalij P.Y., Davis J.T. 2007. Membrane-active calixarenes: toward 'gating' transmembrane anion transport. Tetrahedron 63(44): 10743-10750.
240. Varadan, R., Assfalg, M., Haririnia, A., Raasi, S., Pickart, C., and Fushman, D. 2004. Solution conformation of Lys63-linked di-ubiqutin chain provides clues to functional diversity of polyubiquitin signaling. J. Biological Chemistry. 279: 7055-7063.
241. Vigfusdottir, A., Pasrija, C., Thakore, P.I., Schmidt, R.B., and Hsieh, A.H. 2010. Role of Pericellular Matrix in Mesenchymal Stem CellDeformation during Chondrogenic Differentiation. Cellular and Molecular Bioengineering 3(4): 387-397.
242. Vorlicek, T.P., Kahn, M.D., Kasuya, Y., and Helz, G.R. 2004. Capture of molybdenum in pyrite-forming sediments: Role of ligand-induced reduction by polysulfides. Geochimica et Cosmochimica Acta 68: 547-556.
243. Wang, M.O., Etheridge, J.M., Thompson, J.A., Vorwald, C.E., Dean, D., and Fisher, J.P. 2013. Evaluation of the In Vitro Cytotoxicity of Cross-Linked Biomaterials. Biomacromolecules 14(5): 1321-1329. DOI: 10.1021/bm301962f
244. Wang, X., Danoff, E.J., Sinkov, N.A., Lee, J.H., Raghavan, S.R., and English, D.S. 2006. Highly Efficient Capture and Long-Term Encapsulation of Dye by Catanionic Surfactant Vesicles. Langmuir 22(15): 6461-6464.
245. Wang, H., Song, L., Lee, A., Laird, F., Wong, P.C., and Lee, H.K. 2010. Mossy fiber long-term potentiation deficits in BACE1 knock-outs can be rescued by activation of alpha7 nicotinic acetylcholine receptors. J Neurosci, 30(41): 13808-13.
246. Wang, J., Zhou, J., Donaldson, G.P., Nakayama, S., Yan, L., Lam, Y.F., Lee, V.T., and Sintim, H.O. 2011. Conservative change to the phosphate moiety of cyclic diguanylic monophosphate remarkably affects its polymorphism and ability to bind DGC, PDE, and PilZ proteins. Journal of the American Chemical Society 133(24): 9320-9330
247. Weinert, E., Frankenfield, K., and Rokita, S. 2005. Time-dependent Evolution of Adducts Formed Between Deoxynucleosides and a Model Quinone Methide. Chem. Res.Toxicol. 18: 1364-1370.
248. Weinert, E.E., Dondi, R., Colloredo-Melz, S., Frankenfield, K.N., Mitchell, C.H., Freccero, M., and Rokita, S.E. 2006. Substituents on Quinone Methides Strongly Modulate Formation and Stability of Their Nucleophlic Adducts. J. Am. Chem. Soc. 128: 11940-11947.
249. Weiss, E.P., Kulaputana, O., Ghiu, I.A., Brandauer, J., Wohn, C.R., Phares, D.A., Shuldiner, A.R., and Hagberg, J.M. 2005. Endurance training-induced changes in the insulin response to oral glucose are associated with peroxisome proliferator-activated receptor-g2 Pro12Ala genotype in men but not in women. Metabolism Clinical and Experimental 54: 97-102.
250. Werner, R.M., Shokek, O., and Davis, J.T. 1997. Preparation of 4-oxo-L-norvaline via diazomethane homologation of aspartyl semialdehyde. Journal of Organic Chemistry 62: 8243-8246
251. Wilson, R., Orsetti, J., Klocko, A.D., Aluvihare, C., Peckham, E., Atkinson, P.W., Lehane, M.J., and O’Brochta, D.A. 2003. Post-integration behavior of a mariner gene vector in Aedes aegypti. Insect Biochem. Molec. Biol. 33: 853-863.
252. Wright, T.F., Johns, P.M., Walters, J.R., Lerner, A.P., Swallow, J.G., and Wilkinson, G.S. 2004. Microsatellite variation among divergent populations of stalk-eyed flies, genus Cyrtodiopsis. Genetical Research 83: 1-14.
253. Wu, A., Chakraborty, A., Witt, D., Lagona, J., Damkaci, F., Ofori, M.A., Chiles, J.K., Fettinger, J.C., and Isaacs, L. 2002. Methylene Bridged Glycoluril Dimers: Synthetic Methods. J. Org. Chem, 67: 5817-5830.
254. Wu, C.Y., Hooper, R.M., Han, K., and Taneyhill, L.A. 2014. Migratory neural crest cell αN-catenin impacts chick trigeminal ganglia formation. Developmental Biology 392(2): 295–307. DOI: 10.1016/j.ydbio.2014.05.016
255. Yonemoto, I.T., Li, W., Khullar, A., Reixach, N., and Gerratana, B. 2012. Mutasynthesis of a Potent Anticancer Sibiromycin Analogue. ACS Chemical Biology 7(6): 973-977. DOI: 10.1021/cb200544u
256. Yeatts, A.B., Geibel, E.M., Fears, F.F., and Fisher, J.P. 2012. Human Mesenchymal Stem Cells Positions within Scaffolds Influences Cell Fate During Dynamic Culture. Biotechnology and Bioengineering 109: 2381-2391.
257. Yeung, S.K. and Castonguay, T.W. 2000. The effect of neuropeptide Y on hypothalamic serotonin overflow. Nutritional Neuroscience 3: 373-381.
258. Zambon, R.A., Nandakumar, M., Vakharia, V.N., and Wu, L.P. 2005. The Toll pathway is important for antiviral response in Drosophila. PNAS 102: 7257-7262.
259. Zhang, J., Stuntz, R.M., and Simon, A.E. 2004. Analysis of a viral replication repressor: sequence requirements for a large symmetrical internal loop. Virology 326: 90-102.
260. Zhang, X., Cunningham, M.M., and Walker, R.A. 2003. Solvent polarity at polar solid surfaces: The role of solvent structure. J. Phys. Chem. B 107: 3183-3195.
261. Zhou, N., Tootle, T.L., and Glazebrook, J. 1999. Arabidopsis PAD3, a gene required for camalexin biosynthesis, encodes a putative cytochrome P450 monooxygenase. Plant Cell.11: 2419-2428.
262. Zhou, N., Tootle, T.L., Tsui, F., Klessig, D.F., and Glazebrook, J. 1998. PAD4 functions upstream from salicylic acid to control defense responses in Arabidopsis. Plant Cell. 10: 1021-1030.
263. Zhou, J., Watt, S., Wang, J.X., Nakayama, S., Sayre, D.A., Lam, Y.F., Lee, V.T., and Sintim, H.O. 2013. Potent Suppresion of c-di-GMP Synthesis via I-site Allosteric Inhibition of Diguanylate Cyclases with 2 ‘-F-c-di-GMP. Bioorganic & Medicinal Chemistry 21(14): 4396-4404. DOI: 10.1016/j.bmc.2013.04.050
264. Zhou, W.B., Watt, S.K., Tsai, D.H., Lee, V.T., and Zachariah, M.R. 2013. Quantitative Attachment and Detachments of Baterial Spores from Fine Wire through Continuous and Pulsed DC Electrophoretic Deposition. Journal of Physical Chemistry B 117(6): 1738-1745. DOI: 10.1021/jp307282q
265. Zimnik, N.C., Treadway, T., Smith, R.S., and Araneda, R.C. 2012. Alpha1A-Adrenergic Regulation of Inhibition in the Olfactory Bulb. J. Physiol. 591: 1631-1643